Please note: Recordings of most presentations are now available.
Schedule: Monday, August 15, 2022
- 08:15 AM — 09:00 AM: Continental breakfast & coffee available
- 09:00 AM — 09:30 AM: “Introduction to trend analyses and time-series approaches for modeling” with David Mendez, PhD (conceptual)
- About the Instructor+
- David Mendez, PhD (University of Michigan)Dr. David Mendez is Core Lead for the Career Enhancement Core (CEC) and Project Lead for Research Project 2. He is also a member of the CAsToR Steering Committee. Dr. Mendez is an Associate Professor in the Department of Health Management and Policy at the University of Michigan. His research focuses on modeling trends of cigarette smoking cessation or switching to e-cigarettes. Dr. Mendez’s research also investigates the financial implications of these trends, with a specific focus on tobacco control in the United States.
- Syllabus +
- This module will:
1) Expose you to different approaches to time series modeling
2) Help you understand the underlying assumptions behind different time series modeling - 09:30 AM — 10:15 AM: “Joinpoint regression” with Huann-Sheng Chen, PhD (conceptual)
- About the Instructor+
- Huann-Sheng Chen, PhD (National Cancer Institute)Huann-Sheng Chen, PhD, is a mathematical statistician and program director in the Statistical Research and Applications Branch (SRAB) of the Surveillance Research Program, Division of Cancer Control and Population Sciences at the National Cancer Institute (NCI). Dr. Chen's research interests include biostatistics, statistical genetics and genetic epidemiology. At SRAB, he has been involved in research on genetics simulation, reporting delay modeling of cancer incidence rates and real time reporting, age-period-cohort model for cancer trends, and cancer incidence and mortality projections in national and local populations. In addition, he has been working on further developments of the Joinpoint model methodology. Dr. Chen received a Doctor of Philosophy degree in statistics from the University of Illinois at Urbana-Champaign and a bachelor’s degree in mathematics from the National Taiwan University.
- Syllabus +
- This module will teach you:
1) Understanding the use of Joinpoint model to analyze trends
2) Selection of joinpoints, estimation, and interpretation
3) Annual percent change, average annual percent change and their confidence intervals
4) Model selection procedures
5) Clustering of similar trends
6) Jump model for data with coding change
Suggested reading:- Kim HJ, Fay MP, Feuer EJ, Midthune DN. Permutation tests for joinpoint regression with applications in cancer rates. Stat Med. 2000; 19 (3): 335- 351. correction: 2001; 20(4) :655.
- Chen HS, Zeichner S, Anderson R, Espey D, Kim HJ, Feuer EJ. Joinpoint-jump model in trend analysis with applications to coding changes in health statistics. J Off Stat. 2020; 36 : 49- 62.
- Kim HJ, Luo J, Chen HS, et al. Improved confidence interval for average annual percent change in trend analysis. Stat Med. 2017; 36 : 3059- 3074.
- Kim HJ, Chen HS, Midthune D, et al. Data driven choice of a model selection method in joinpoint regression. Journal of Applied Statistics. 2022.
- Kim HJ, Luo J, Kim J, Chen HS, Feuer EJ. Clustering of trend data using joinpoint regression models. Stat Med. 2014; 33 : 4087- 4103.
- 10:15 AM — 10:30 AM: Break (Continental breakfast & coffee available)
- 10:30 AM — 12:00 NOON: “Joinpoint regression” with Jihyoun Jeon, PhD, MS (application)
- About the Instructor+
- Jihyoun Jeon, PhD, MS (University of Michigan)Dr. Jihyoun Jeon is Project Lead for the Data Analysis and Dissemination Core (DAD). She is an Assistant Research Scientist in the Department of Epidemiology at the University of Michigan School of Public Health and a member of the Rogel Cancer Center’s Cancer Epidemiology and Prevention Program. Dr. Jeon has been an instrumental member of several consortia focused on developing modeling tools to characterize cancer risk, such the Lung Cancer group of the NCI consortium ‘Cancer Intervention and Surveillance Modeling Network (CISNET)’ and the Colorectal Transdisciplinary (CORECT) Study in the Genetic Associations and Mechanisms in Oncology (GAME-ON). Her modeling expertise incorporates risk prediction and cancer etiology to evaluate screening methods to effectively reduce cancer incidence.
- Syllabus +
- The hands-on part of the module will teach you how to:
1) Perform a trend analysis using the Joinpoint Trend Analysis software developed by the NCI
2) Identify trend change points which break the trend into distinct periods
3) Compare trends between different subpopulationsSuggested reading:- Joinpoint Trend Analysis Software & cited reference - Kim HJ, Fay MP, Feuer EJ, Midthune DN. Permutation tests for joinpoint regression with applications to cancer rates. Stat Med 2000;19:335-51 (correction: 2001;20:655)
- Meza R, Jimenez-Mendoza E, Levy DT. Trends in Tobacco Use Among Adolescents by Grade, Sex, and Race, 1991-2019. JAMA Netw Open. 2020 Dec 1;3(12):e2027465.
- Salvatore M, Jeon J, Meza R. Changing trends in liver cancer incidence by race/ethnicity and sex in the US: 1992-2016. Cancer Causes Control. 2019 Dec;30(12):1377-1388.
- Meza R, Meernik C, Jeon J, Cote ML. Lung cancer incidence trends by gender, race and histology in the United States, 1973-2010. PLoS One. 2015 Mar 30;10(3):e0121323.
Note:
The Joinpoint analysis that we will run during this workshop is quite straightforward, so there are no required prerequisites or tutorials for the Joinpoint portion of this workshop. - 12:00 NOON — 01:00 PM: Lunch Break (catered)
- 01:00 PM — 02:30 PM: “Age-period-cohort modeling” with Ted Holford, PhD (conceptual)
- About the Instructor+
- Ted Holford, PhD (Yale University)Dr. Theodore Holford is Project Lead of Data Analysis and Dissemination Core (DAD), Co-Investigator for Research Project 1, and Co-Investigator for Research Project 2, as well as a member of the CAsToR Steering Committee. He is the Susan Dwight Bliss Professor of Public Health at the Yale University School of Medicine, as well as a member of the Yale Cancer Center and Yale Institute for Global Health. Dr. Holford has worked extensively in methodology development, specifically to evaluate trends using age-period-cohort models and inform intervention strategies at the population level.
- Syllabus +
- This module will teach you how to:
1) Express temporal trends from an age, period, and cohort perspective.
2) Parameterize time in a statistical model.
3) Partition temporal trends into linear and curvature effects.
4) Model trends of ever smoking prevalence.
5) Model trends in smoking initiation and cessation probabilities.
6) Combine the contributions of initiation and cessation to quantify smoking exposure.
7) Quantify the effect of smoking on population health.Required reading:Suggested reading:- Holford, T.R., Levy, D.T., McKay, L.A., Clarke, L., Racine, B., Meza, R., Jeon, J., Feuer, E.J. Patterns of Birth Cohort–Specific Smoking Histories, 1965–2009. American Journal of Preventive Medicine. 46: e31-e37, 2014.
- Holford, T.R., Meza, R., Warner, K.E., Meernik, C., Jeon, J., Moolgavkar, S.H., Levy, D.T. Tobacco control and the reduction in smoking-related premature deaths in the United States, 1964-2012. Journal of the American Medical Association. 311: 164-171, 2014
- 02:30 PM — 02:45 PM: Break (coffee available)
- 02:45 PM — 04:45 PM: “Standard longitudinal data analysis” with Steve Cook, PhD (conceptual and application)
- About the Instructor+
- Steve Cook, PhD (University of Michigan)Training: PhD, Sociology, University of Toronto; M.A. Criminology, University of Toronto; MA Sociology (specialization program and policy evaluation, University of Western Ontario; BA Sociology and History, University of Western Ontario
Research Focus: I am broadly interested in the intersection between criminology and public health, and social problems related to mental health, substance abuse, their overlap, and other risky and illicit behaviours. Three overarching themes guide my current research agenda: (1) the study of child and adolescent mental health using clinical and population-based data, (2) the study of hard-to-reach and at-risk populations, and (3) the use of population-based data to understand the prevalence and risk factors associated with risky and dangerous behaviours. I have an emerging interest in criminological and public health problems related to technological innovations and social media use, and am keenly interested in examining the spatial and temporal processes associated with these problems. - Syllabus +
- The hands-on part of the module will teach you how to:
1) create censor and duration variables;
2) restructure data to create an unbalanced person-period data set;
3) estimate discrete time models;
4) incorporate replicate weights.Suggested reading:- Allison, P. D. (2014). Event history and survival analysis: Regression for longitudinal event data (Vol. 46). SAGE publications.
- Allison, P. D. (2010). Survival analysis using SAS: a practical guide. SAS Institute.
- Jenkins, S. P. (2005). Survival analysis. Unpublished manuscript, Institute for Social and Economic Research, University of Essex, Colchester, UK, 42, pages 54-56
- Singer, J. D., Willett, J. B. (2003). Applied longitudinal data analysis: Modeling change and event occurrence. Oxford university press.
- Singer, J. D., & Willett, J. B. (1993). It’s about time: Using discrete-time survival analysis to study duration and the timing of events. Journal of educational statistics, 18(2), 155-195.
- Wheaton, B,. & Young, M. (2020). Generalizing the regression model: Techniques for longitudinal and contextual analysis. Sage Publications.
Note:
It is not required that workshop participants have a background in Stata, as it will be relatively simple to take the logic of Dr. Cook’s practical example and then to apply it to the programming software of your choice. However, if you are interested in learning more about Stata, Dr. Cook has recommended several resources.
Schedule: Tuesday, August 16, 2022
- 08:15 AM — 09:00 AM: Continental breakfast & coffee available
- 09:00 AM — 09:30 AM: “Introduction to compartmental modeling” with David Mendez, PhD (conceptual)
- About the Instructor+
- David Mendez, PhD (University of Michigan)Dr. David Mendez is Core Lead for the Career Enhancement Core (CEC) and Project Lead for Research Project 2. He is also a member of the CAsToR Steering Committee. Dr. Mendez is an Associate Professor in the Department of Health Management and Policy at the University of Michigan. His research focuses on modeling trends of cigarette smoking cessation or switching to e-cigarettes. Dr. Mendez’s research also investigates the financial implications of these trends, with a specific focus on tobacco control in the United States.
- Syllabus +
- This module will teach you how to:
1) Understand the basic concepts behind compartmental models and their advantages and disadvantages over individual-based (micro) models.
2) Understand a basic taxonomy and key properties of macro-dynamic models.Suggested reading:- Brauer F, Castillo-Chávez C (2001). Mathematical Models in Population Biology and Epidemiology. NY: Springer. ISBN 0-387-98902-1
- Towers, Sherry. Introduction to Compartmental Modeling
- Mendez D, Warner KE, Courant PN. “Has Smoking Cessation Ceased? Expected Trends in the Prevalence of Smoking in the United States.” American Journal of Epidemiology, 1998;148(3):249-58. doi: 10.1093/oxfordjournals.aje.a009632
- 09:30 AM — 10:30 AM: “Markov modeling of transitions, Part 1: Multistate transition modeling” with Andrew Brouwer, PhD, MS, MA (conceptual)
- About the Instructor+
- Andrew Brouwer, PhD, MS, MA (University of Michigan)Andrew Brouwer is mathematical epidemiologist and modeler. He is currently an Assistant Research Scientist in the Department of Epidemiology at the University of Michigan. Andrew uses mathematical and statistical modeling to address public health problems in infectious disease, cancer, and tobacco control. He is a faculty affiliate in the Center for Study of Complex Systems. Andrew holds graduate degrees in mathematics, statistics, and environmental science and engineering.
- Syllabus +
- This module will teach you how to:
1) Understand why transitions are important to many research questions for tobacco control
2) Specify, implement, and interpret a multistate transition applied to longitudinal data of tobacco product use
3) Graphically summarize transition probabilities and hazard ratios
4) Apply a multistate transition model to the Population Assessment of Tobacco and Health (PATH) StudySuggested reading:- If you are not already familiar with R, or if you need a refresher, please use this tutorial: An Introduction to R. Sections 2-10.
- Jackson. (2019). Multi-state modelling with R: the msm package.
Required software:
R (v4.0 or later) and RStudio. Packages: msm, minqa, expm, dplyr, numDeriv, ggplot2, reshape2Note:
Includes a 15-minute break between conceptual and hands-on. - 10:30 AM — 10:45 AM: Break (Continental breakfast & coffee available)
- 10:45 AM — 11:45 AM: “Markov modeling of transitions, Part 1: Multistate transition modeling” with Andrew Brouwer, PhD, MS, MA (application)
- About the Instructor+
- Andrew Brouwer, PhD, MS, MA (University of Michigan)Andrew Brouwer is mathematical epidemiologist and modeler. He is currently an Assistant Research Scientist in the Department of Epidemiology at the University of Michigan. Andrew uses mathematical and statistical modeling to address public health problems in infectious disease, cancer, and tobacco control. He is a faculty affiliate in the Center for Study of Complex Systems. Andrew holds graduate degrees in mathematics, statistics, and environmental science and engineering.
- Syllabus +
- This module will teach you how to:
1) Understand why transitions are important to many research questions for tobacco control
2) Specify, implement, and interpret a multistate transition applied to longitudinal data of tobacco product use
3) Graphically summarize transition probabilities and hazard ratios
4) Apply a multistate transition model to the Population Assessment of Tobacco and Health (PATH) StudySuggested reading:- If you are not already familiar with R, or if you need a refresher, please use this tutorial: An Introduction to R. Sections 2-10.
- Jackson. (2019). Multi-state modelling with R: the msm package.
Required software:
R (v4.0 or later) and RStudio. Packages: msm, minqa, expm, dplyr, numDeriv, ggplot2, reshape2 - 11:45 AM — 12:45 PM: Lunch Break (catered)
- 12:45 PM — 01:45 PM: “Markov modeling of transitions, Part 2: Latent transition analysis” with Ritesh Mistry, PhD (conceptual)
- About the Instructor+
- Ritesh Mistry, PhD (University of Michigan)Dr. Ritesh Mistry is Core Lead for the Career Enhancement Core (CEC) and a member of the CAsToR Steering Committee. Dr. Mistry is an Associate Professor of Health Behavior and Health Education at the University of Michigan. His research focuses on evaluating health disparities in smoking trends, as well as adolescent tobacco use and secondhand smoke exposures in global settings.
- Syllabus +
- Learning objectives:
1) Understand the conceptual underpinnings of latent transition analysis and its value to tobacco control research.
2) Describe the key analysis steps involved in conducting latent transition analysis.
3) Interpret the parameters and results generated from latent transition analysis.Suggested reading:- Collins, L. M., & Lanza, S. T. (2009). Latent class and latent transition analysis: With applications in the social, behavioral, and health sciences (Vol. 718). John Wiley & Sons.
- Lanza, S. T., Patrick, M. E., & Maggs, J. L. (2010). Latent transition analysis: Benefits of a latent variable approach to modeling transitions in substance use. Journal of drug issues, 40(1), 93-120.
- Lanza, S. T., Dziak, J. J., Huang, L., Wagner, A., & Collins, L. M. (2015). Proc LCA & Proc LTA users’ guide (Version 1.3. 2). University Park: The Methodology Center, Penn State.
- Huh, J., & Leventhal, A. M. (2016). Progression of poly-tobacco product use patterns in adolescents. American Journal of preventive medicine, 51(4), 513-517.
- 01:45 PM — 02:00 PM: Break (coffee available)
- 02:00 PM — 02:30 PM: “Bayesian estimation and the Kalman Filter” with David Mendez, PhD (conceptual)
- About the Instructor+
- David Mendez, PhD (University of Michigan)Dr. David Mendez is Core Lead for the Career Enhancement Core (CEC) and Project Lead for Research Project 2. He is also a member of the CAsToR Steering Committee. Dr. Mendez is an Associate Professor in the Department of Health Management and Policy at the University of Michigan. His research focuses on modeling trends of cigarette smoking cessation or switching to e-cigarettes. Dr. Mendez’s research also investigates the financial implications of these trends, with a specific focus on tobacco control in the United States.
- Syllabus +
- This module will teach you how to:
1) Understand the basic principles of Bayesian estimation.
2) Understand how Bayesian estimation relates to structural time series modeling.
3) Understand the mechanics of the Kalman filter and its applications to structural time series modeling. - 02:30 PM — 03:30 PM: “Bayesian estimation and the Kalman Filter” with Thuy Le, PhD (application)
- About the Instructor+
- Thuy Le, PhD (University of Michigan)Dr. Le is an Assistant Research Scientist, the Department of Health Management and Policy, School of Public Health, University of Michigan. Dr. Le received her Ph.D. in Applied Mathematics, from the University of Padua, Italy. Dr. Le's research interest includes Dynamic Systems, Mathematical Modeling, and Parameter Estimation.
- Syllabus +
- The hands-on part of the module will teach you how to:
1) Apply the Kalman filter to estimate the trajectory of the smoking cessation rate from smoking prevalence observations over time.
2) Learn how to implement and interpret the results of a Kalman filter estimation in R.Required reading:- Mendez D, Warner KE, Courant PN. “Has Smoking Cessation Ceased? Expected Trends in the Prevalence of Smoking in the United States.” American Journal of Epidemiology, 1998;148(3):249-58. doi: 10.1093/oxfordjournals.aje.a009632
- Welch G & Bishop G. “An Introduction to the Kalman Filter.” University of North Carolina at Chapel Hill, 2001 by ACM, Inc.
Suggested reading:Required software:
RStudio